2024
Vadez V, Grondin A, Chenu K, Henry A, Laplaze L, Millet EJ (2024) Crop traits and production under drought. Nature reviews earth & environment https://doi.org/10.A038/s43017-023-00514-w
Leclerc L, Nguyen TH, Duval P, Mariotti V, Petitot AS, Orjuela J, Ogier JC, Gaudriault S, Champion A, Nègre N (2024) Early transcriptomic responses of rice leaves to herbivory by Spodoptera frugiperda. Scientific Reports 14:2836
de la Fuente C, Grondin A, Debieu M, Belin C, Hajjarpoor A, Atkinson JA, Passot S, Salson M, Orjuela J, Tranchant-Dubreuil C, Brossier JR, Steffen M, Morgado C, Dinh HN, Pandey BP, Darmau J, Champion A, Petitot AS, Barrachina C, Pratlong M, Mounier T, Gantet P, Gangashetty P, Guédon Y, Vadez V, Reichheld JP, Bennett MJ, Kane N, Guyomarc'h S, Wells DM, Vigouroux Y, Laplaze L (2024) Glutaredoxin regulation of primary root growth confers early drought stress tolerance in pearl millet. eLife 12:RP86169
2023
Thiaw MR, Gantet P (2023) The emerging functions of mini zinc fingers (MIF) microproteins in seed plants, a minireview. Biochimie 218:69-75
Khodaeiaminjan M, Knoch D, Thiaw MR, Marchetti CF, Korinkova N, Techer A, Nguyen DT, Chu J, Bertholomey V, Doridant I, Gantet P, Graner A, Neumann K, Bergougnoux V (2023) Genome-wide association study in two-row spring barley landraces identifies QTLs associated with plantlets root system architecture traits in well-watered and osmotic stress conditions. Frontiers in Plant Science 14:1120
Dolinska A, Hassenforder E, Loboguerrero AM, Sultan B, Bossuet J, Cottenceau J, Bonatti M, Hellen J, Mekki I, Drogoul A, Vadez V (2023) Co-production opportunities seized and missed in decision-support frameworks for climate-change adaptation in agriculture - How do we practice the "best practice"? Agricultural Systems 212:103775
D'Agostini F, Ruiz-Pérez J, Madella M, Vadez V, Kholova J, Lancelotti C (2023) Phytoliths as indicators of plant water availability: The case of millets cultivation in the Indus Valley civilization. Review of Palaeobotany and Palynology 309:104783
Affortit P, Ahmed MT, Grondin A, Delzon S, Carminati A, Laplaze L (2023) Keep in touch: the soil-root hydraulic continuum and its role in drought resistance in crops. Journal of Experimental Botany erad312
Nguyen HT, Cheaib M, Fournel M, Rios M, Gantet P, Laplaze L, Guyomarc'h S, Riemann M, Heitz T, Petitot AS, Champion A (2023) Genetic analysis of the rice jasmonate receptors reveals specialized functions for OsCOI2. PLoS One 18:e0291385
Vadez V, Pilloni R, Grondin A, Hajjarpoor A, Belhouchette H, Brouziyne Y, Chehbouni G, Kharrou MH, Zitouna-Chebbi R, Mekki I, Molénat J, Jacob F, Bossuet J (2023) Water use efficiency across scales: from genes to landscapes. Journal of Experimental Botany erad052
Hirt H, Al-Babili S, Almeida-Trapp M, Antoine M, Aranda M, Bartels D, Bennett M, ..., Laplaze L, ..., Wrzaczek M, Wulff B, Young IM (2023) PlantACT! - how to tackle the climate crisis. Trends in Plant Science S1360-1385(23)00024-9
Martin A, Laplaze L, Bäurle I (2023) Preparing for an incertain future: molecular responses of plants facing climate change. Journal of Experimental Botany 74:1297-1302
Ndecky S, Nguyen TH, Eiche E, Cognat V, Pflieger D, Pawar N, Betting F, Saha S, Champion A, Riemann M, Heitz T (2023) Jasmonate signaling controls negative and positive effectors of salt stress tolerance in rice. Journal of Experimental Botany erad086
2022
Pilloni R, Faye A, Kakkera A, Kholova J, Badji R, Faye C, Vadez V (2022) Higher sowing density of pearl millet increases productivity and water use efficiency in high evaporative demand seasons. Frontiers in Plant Science 13:1035181
Dong H, Birhan T, Abajebel N, Wakjira M, Mitiku T, Lemke C, Vadez V, Paterson AH, Bantte K (2022) Natural variation further increases resilience of sorghum bred for chronically drought-prone environments. Journal of Experimental Botany 73:5730-5744
Gonin M, Jeong K, Coudert Y, Lavarenne J, Hoang GT, Bes M, To HTM, Ndella Thiaw MR, Do TV, Moukouanga D, Guyomarc'h S, Bellandre K, Brossier JR, Parizot B, Nguyen HT, Beeckman T, Bergougnoux V, Rouster J, Sallaud C, Laplaze L, Champion A, Gantet P (2022) CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice. The Plant Journal 111:546-566
de la Fuente Cantó C, Diouf MN, Ndour PMS, Debieu M, Grondin A, Passot S, Champion A, Barrachina C, Pratlong M, Gantet P, Assigbetsé K, Kane N, Cubry P, Diedhiou AG, Heulin T, Achouak W, Vigouroux Y, Cournac L, Laplaze L (2022) Genetic control of rhizosheat formation in pearl millet. Scientific Reports 12:9205
Bonnamy M, Pinel-Galzi A, Gorgues L, Chalvon V, Hébrard E, Chéron S, Nguyen TH, Poulicard N, Sabot F, Pidon H, Champion A, Césari S, Kroj T, Albar L (2022) Rapid evolution of an RNA virus to escape recognition by a rice nucleotide-binding and leucine-rich repeat domain immune receptor. New Phytologist 237: 900-913
Grondin A, Bhosale R, Atkinson JA, Faye A, Jones DH, Benson E, Burridge J, Sine B, Vadez V, Pridmore T, Wells DM, Laplaze L, Kane NA, Bennett MJ (2022) High-throughput root phenotyping: Opportunities and challenges for the adaptation of arid and semi-arid crops to future climates. In Crop Adaptation and Improvement for Drought-Prone Environments. Editors: Kane A, Foncera D, Dalton TJ New Prairie Press 258-282
de la Fuente Cantó C, Vigouroux Y (2022) Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches. BMC Genomics 23:490
Hajjarpoor A, Nelson WCD, Vadez V (2022) How process-based modeling can help breeding deal with G x E x M interactions. Fields Crop Research 283:108554
Larmande P, Tagny Ngompe G, Venkatesan A, Ruiz M (2022) AgroLD: A knowledge graph database for plant functional genomics. Methods in Molecular Biology 2443:527-540
Sempéré G, Larmande P, Rouard M (2022) Managing high-density genotyping data with Gigwa. Methods in Molecular Biology 2443:415-427
Affortit P, Effa Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Perálvarez MC, Pilloni R, Welcker C, Champion A, Gantet P, Diedhiou AG, Manneh B, Aroca R, Vadez V, Laplaze L, Cubry P, Grondin A (2022) Physiological and genetic control of transpiration efficiency in African rice, Oryza glaberrima Steud. Journal of Experimental Botany 73:5279-5293
Ndoye S, Burridge J, Bhosale R, Grondin A, Laplaze L (2022) Root traits for low input agroecosystems in Africa: lessons from three case studies. Plant, Cell & Environment 45: 637-649
Bellande K, Trinh DC, Gonzalez A-A, Dubois E, Petitot A-S, Lucas M, Champion A, Gantet P, Laplaze L, Guyomarc'h S (2022) PUCHI represses early meristem formation in developing lateral roots of Arabidopsis thaliana. Journal of Experimental Botany 73:3496-3510
Guyomarc'h S, Lucas M, Laplaze L (2022) Postembryonic organogenesis in plants: Experimental induction of new shoot and root organs. Methods in Molecular Biology 2395:79-95.
Faye A, Laplaze L, Sine B, Chopart J-L (2022) RACINE2.2: A software application for processing and mapping spatial distribution of root length density and potential root extraction ratio from root counts on trench profiles. Methods in Molecular Biology 2395:247-258.
Larmande P, Todorov K (2022) Revealing genotype-phenotype interactions: The AgroLD experience and challenges. In: Chen M, Hofestädt R (eds) Integrative Bioinformatics. Springer, Singapore. https://doi.org/10.1007/978-981-16-6795-4_16
Mofini MT, Diedhiou AG, Simonin M, Tchouomo Dondjou D, Pignoly S, Ndiaye C, Min D, Vigouroux Y, Laplaze L, Kane A (2022) Cultivated and wild pearl millet display contrasting patterns of abundance and co-occurence in their root mycobiome. Scientific Reports 12:207.
2021
Beggi F, Vadez V, Buerkert A (2021) Ammonium fertilization increases pearl millet yield by promoting early root growth, higher tillering, and water use during grain filling in a low P Sahelian soil. Journal of Plant Nutrition and Soil Science 184:123-131
Gano B, Dembele JSB, Tovignan TK, Sine B, Vadez V, Diouf D, Audebert A (2021) Adaptation responses to early drought stress of West Africa sorghum varieties. Agronomy 11:443
Nelson CD, Hoffmann, Vadez V, Rötter RP, Koch M, Whitbread AM (2021) Can intercropping be an adaptation to drought? A model-based analysis for pearl millet-cowpea. Journal of Agronomy and Crop Science 00:1-18
Vadez V, Choudhary S, Kholova J, Hash CT, Srivastava R, Ashok Kumar A, Prandavada A, Anjaiah M (2021) Transpiration efficiency: insights from comparisons of C4 cereal species. Journal of Experimental Botany 72:5221-5234
Lacombe S, Bangratz M, Ta HA, Nguyen TD, Gantet P, Brugidou C (2021) Optimized RNA silencing strategies for rice ragged stunt virus resistance in rice. Plants 10:2008
Saini S, Kaur N, Singh B, Singh V, Marothia D, Gantet P, Pati KP (2021) Morphological analysis, protein profiling and expression analysis of auxin homeostasis genes of roots of two contrasting cultivars of rice provide inputs on mechanisms involved in rice adaptation towards salinity stress. Plants 10:1544
Hoang TG, Tran LH, Do TV,Vu HTT, Vu AM, Dinh PH, Pham XH, Gantet P (2021) Screening of drought tolerance potential of a collection of 102 Vietnamese indica traditional rice varieties. Vietnam Journal of Agricultural Science 19:161-172 (in Vietnamese)
Le TD, Gathignol F, Vu HT, Nguyen KL, Tran LH, Vu HTT, Dinh TX, Lazennec F, Pham XH, Véry AA, Gantet P, Hoang TG (2021) Genome wide association mapping of salinity tolerance at the seedling stage in a panel of Vietnamese landraces reveals new valuable QTLs for salinity stress tolerance breeding in rice. Plants 10:1088
Hajjarpoor A, Kholová J, Pasupuleti J, Soltani A, Burridge J, Degala SB, Gattu S, Murali TV, Garin V, Radhakrishnan T, Vadez V (2021) Environmental characterization and yield gap analysis to tackle genotype-by-environment-by-managment interactions and map region-specific agronomic and breeding targets in groundnut. Field Crops Research 267:108160
Nehbandani A, Soltani A, Hajjarpoor A, Dadrasi A, Nourbakhsh F (2021) Comprehensive yield gap analysis and optimizing agronomy practices of soybean in Iran. The Journal of Agricultural Science158:8-9
Vadez V, Hajjarpoor A, Korbu LB, Alimagham M, Pushpavalli R, Ramirez ML, Kashiwagi J, Kholová J, Turner NC, Sadras VO (2021) Chickpea, in: Crop physiology case histories for major crops Elsevier pp. 342-358
Guyomarc'h S, Boutte Y, Laplaze L (2021) AP2/ERF transcription factors orchestrate Very Long Chain Fatty Acids biosynthesis during Arabidopsis lateral root development. Molecular Plant 14:205-207
Ndour PMS, Mbacké Barry C, Tine D, de la Fuente Cantó C, Gueye M, Barakat M, Ortet P, Achouak W, Ndoye I, Sine B, Laplaze L, Heulin T, Cournac L (2021) Pearl millet genotype impacts microbial diversity and enzymatic activities in relation to root-adhering soil aggregation. Plant and Soil 464:109-129
2020
Sinclair TR, Soltani A, Marrou H, Ghanem ME, Vadez V (2020) Geospatial assessment for crop physiological and management improvements with examples using the simple simulation model. Crop Science 60:700-708
Soltani A, Alimagham SM, Nehbandani A, Torabi B, Zeinali E, Dadrasi A, Zand E, Ghassemi S, Pourshirazi S, Alasti O, Hosseini RS, Zahed M, Arabameri R, Mohammadzadeh Z, Rahban S, Kamari H, Fayazi H, Mohammadi S, Keramat S, Vadez V, van Ittersum MK, Sinclair TR (2020) SSM-iCrop2; A simple model for diverse crop species over large areas. Agricultural Systems 182:102855
Pushpavalli R, Berger JD, Turner NC, Siddique KHM, Colmer TD, Vadez V (2020) Cross-tolerance for drought, heat and salinity stresses in chickpea (Cicer arietinum L.). Journal of Agronomy and Crop Science 206:405-419
Soltani A, Alimagham SM, Nehbandani A, Torabi B, Zeinali E, Zand A, Vadez V, van Loom MP, van Ittersum MK (2020) Future food self-sufficiency in Iran: A model-based analysis. Global Food Security 24:100351
Choudhary S, Guha A, Kholová J, Pandravada A, Messina CD, Cooper M, Vadez V (2020) Maize, sorghum and pearl millet have highly contrasting species strategies to adapt to water stress and climate change-like conditions. Plant Science 295:11297
Sivasakhti K, Tharanya M, Zaman-Allah M, Kholová J, Thirunalasundari T, Vadez V (2020) Transpiration difference under high evaporative demand in chickpea (Cicer arietinum L.) may be explained by differences in the water transport pathway in the root cylinder. Plant Biology 22:769-780
Soltani A, Alimagham SM, Nehbandani A, Torabi B, Zeinali E, Zand E, Ghassemi S, Vadez V, Sinclair TR, van Ittersum MK (2020) Modeling plant production at country level as affected by availability and productivity of land and water. Agricultural Systems 183:102859
Kar S, Tanaka R, Korbu LB, Kholová J, Iwata H, Durbha SS, Adinarayana J, Vadez V (2020) Automated discretization of "transpiration restriction to increasing VPD" features from outdoors high-throughput phenotyping data. Plant Method 16:140
Kar S, Garin V, Kholová J, Vadez V, Durbha SS, Tanaka R, Iwata H, Urban MO, Adinarayana J (2020) SpaTemHTP: A data analysis pipeline for efficient processing and utilization of temporal high-throughput phenotyping data. Frontiers in Plant Science 11:552509
Kar S, Purbey VK, Suradhaniwar S, Korbu LB, Kholová J, Durbha SS, Adinarayana J, Vadez V (2020) An ensemble machine learning approach for determination of the optimum sampling time for evaporation assessment from high-throughput phenotyping data. Computer and Electronics in Agriculture 182:105992
Grondin A, Affortit P, Tranchant-Dubreuil C, de la Fuente-Cantó C, Mariac C, Gantet P, Vadez V, Vigouroux Y, Laplaze L (2020) Aquaporins are main contributirs to root hydraulic conductivity in pearl millet (Pennisetum glaucum (L) R. Br.). PLOS One 15:e0233481
Chevallier T, Loireau M, Courault R, Chapuis-Lardy L, Desjardins T, Gomez C, Grondin A, Guérin F, Orange D, Pélissier R et al (2020) Paris climate agreement: Promoting interdisciplinary science and stakeholders' approaches for multi-scale implementation of continental carbon sequestration. Sustainability 12:6715
Montiel G, Gaudet M, Laurans F, Rozenberg P, Simon M, Gantet P, Jay-Allemand C, Breton C (2020) Overexpression of MADS-box gene AGAMOUS-LIKE 12 activates root development in Juglans sp. and Arabidopsis thaliana Plants 9:444
Lavarenne J, Gonin M, Champion A, Javelle M, Adam H, Rouster J, Conejéro G, Lartaud M, Verdeil J-L, Laplaze L, Sallaud C, Lucas M, Gantet P (2020) Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice. PLOS One 15:e0238736
Ndour PM, Heulin T, Achouak W, Laplaze L, Cournac L (2020) The rhizosheath: from desert plants adaptation to crop breeding. Plant and Soil 456:1-13
Strock CF, Burridge JD, Niemiec MD, Brown KM, Lynch JP (2020) Root metaxylem and architecture phenotypes integrate to regulate water use under drought stress. Plant Cell and Environment 44:49-67
Campbell M, Grondin A, Walia H, Morota G (2020) Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice (Oryza sativa). Journal of Experimental Botany 71:5669-5679
de la Fuente Cantó C, Simonin M, King E, Moulin L, Bennett MJ, Castrillo G, Laplaze L (2020) An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness. The Plant Journal 103:951-964
Djighaly PI, Ngom D, Diagne N, Fall D, Ngom M, Diouf D, Hocher V, Laplaze L, Champion A, Farrant JM, Svistoonoff S (2020) Effect of Casuarina plantations inoculated with arbuscular mycorrhizal fungi and Frankia on the diversity of herbaceous vegetation in saline environments in Senegal. Diversity 12:293
Ibtihaj El M, Fahr M, Abourouh M, Bendaou N, Triqui Zine-El A, Guedira A, Bogusz D, Laplaze L, Smouni A (2020) Zinc, lead, and cadmium tolerance and accumulation in Cistus libanotis, Cistus albidus, and Cistus salviifolius: Perspectives on phytoremediation. Remediation 30:73-80
Larrieu A, Nguyen TH, Champion A (2020) Use of fluorescent reporters to analyse dynamic and spatial responses to mechanical wounding. Methods in Molecular Biology 2085:161-168
Nguyen TH, Mai HTT, Moukouanga D, Lebrun M, Bellafiore S, Champion A (2020) A CRISPR/Cas9-mediated gene editing of the Jasmonate biosynthesis OsAOC gene in rice. Methods in Molecular Biology 2085:199-209
Ngom M, Cissoko M, Gray K, Hocher V, Laplaze L, Sy MO, Svistoonoff S, Champion A (2020) Establishment of actinorhizal symbiosis in response to Ethylene, Salicylic Acid and Jasmonate. Methods in Molecular Biology 2085:117-130
2019
Ramirez-Villegas J, Molero Milan A, Alexandrov N, Asseng S, Challinor AJ, Crossa J, van Eeuwijk F, Ghanem ME, Grenier C, Heinemann AB, Wang JK, Juliana P, Kehel Z, Kholova J, Koo J, Pequeno D, Quiroz R, Rebolledo MC, Sukumaran S, Vadez V, White JW, Reynolds M (2019) CGIAR modeling approaches for resource-constrained scenarios: I. Accelerating crop breeding for a changing climate. Crop Science 60:547-567.
Sivasakhti K, Marques E, Kalungwana N, Carrasquilla-Garcia N, Chang PL, Bergmann EM, Bueno E, Cordeiro M, Sani SG, Udupa SM, Rather IA, Rouf Mir R, Vadez V, Vandermark GJ, Gaur PM, Cook DR, Boesch C, von Wettberg EJB, Kholova J, Penmetsa RV (2019) Stay-green phenotype associated with molecular variation at an orthodox of Mendel's I gene for cotyledon color: Implications for crop production and carotenoid biofortification. International Journal of Molecular Science 20:5562
Karthika G, Kholova J, Alimagham S, Ganesan M, Keerthi C, Kumari R, Vadez V (2019) Measurement of transpiration restriction under high vapor pressure deficit for sorghum mapping population parents. Plant Physiology Reports 24:74-85
To HTM, Nguyen HT, Dang NTM, Nguyen NH, Bui TX, Lavarenne J, Phung NTP, Gantet P, Lebrun M, Bellafiore S, Champion A (2019) Unraveling the genetic elements involved in shoot and root growth regulation by Jasmonate in rice using a genome-wide association study. Rice 12:69
Nguyen TH, To HTM, Lebrun M, Bellafiore S, Champion A (2019) Jasmonates-the master regulator of rice development, adaptation and defense. Plants 9:8
Gonin M, Bergougnoux V, Nguyen T, Gantet P, Champion A (2019) What makes adventitious roots? Plants 8:e240
Hoang TG, Gantet P, Nguyen HK, Phung PTN, Ha TL, Nguyen TT, Lebrun M, Courtois B, Pham XH (2019) Genome-wide association mapping of leaf mass traits in a Vietnamese rice landrace panel. PLOS One 14:e0219274
Dubrovsky JG, Fukaki H, Laplaze L, Laskowski M (2019) Editorial: Root branching: From lateral primordium initiation and morphogenesis to function. Frontiers in Plant Science 10:1462
Banda J, Bellande K, von Wangenheim D, Goh T, Guyomarc'h S, Laplaze L, Bennet MJ (2019) Lateral root formation in Arabidopsis: A well-ordered LRexit. Trends in Plant Science 1:14
Faye A, Sine B, Chopart JL, Grondin A, Lucas M, Diedhiou AG, Gantet P, Cournac L, Min D, Audebert A, Kane A, Laplaze L (2019) Development of a model estimating root length density from root impacts on a soil profile in pearl millet (Pennisetum glaucum (L.) R. Br). Application to measure root system response to water stress in field conditions. Plos One 14:e0214182
Ghodhbane-Gtari F, Nouioui I, Hezbri K, Lundstedt E, D'Angelo T, McNutt Z, Laplaze L, Gherbi H, Vaissayre V, Svistoonoff S, Ahmed HB, Boudabous A, Tisa LS (2019) The plant-growth-promoting actinobacteria of the genus Nocardia induces root nodule formation in Casuarina glauca. Antonie van Leeuwenhoek 112:75
Hoang TG, Dinh VL, Nguyen TT, Ta KN, Gathignol F, Mai DC, Jouannic S, Tran DK, Khuat HT, Do NV, Lebrun M, Courtois B, Gantet P (2019) Genome-wide association study of a panel of Vietnamese rice landraces reveals new QTLs for tolerance to water deficit during the vegetative phase. Rice 12:4
Lavarenne J, Gonin M, Guyomarc'h S, Rouster J, Champion A, Sallaud C, Laplaze L, Gantet P, Lucas M (2019) Inference of the gene regulatory network acting downstream of CROWN ROOTLESS 1 in rice reveals a regulatory cascade linking genes involved in auxin signaling, crown root initiation and root meristem specification and maintenance. The Plant Journal, 100:954
Nguyen LK, Grondin A, Courtois B, Gantet P (2019) Next-generation sequencing accelerates crop gene discovery. Trends in Plant Science 24:263
Trinh DC, Lavenus J, Goh T, Boutté Y, Drogue Q, Vaissayre V, Tellier F, Lucas M, Voß U, Gantet P, Faure JD, Dussert S, Fukaki H, Bennett MJ, Laplaze L, Guyomarc'h S (2019) PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation. Proceedings of the National Academy of Sciences 116:201906300
2018
Djighaly PI, Diagne N, Ngom M, Ngom D, Hocher V, Fall D, Diouf D, Laplaze L, Svistoonoff S, Champion A (2018) Selection of arbuscular mycorrhizal fungal strains to improve Casuarina esquisetifolia L. and Casuarina glauca Sieb. tolerance to salinity. Annals of Forest Science 75:72
Trinh DC, Laplaze L, Guyomarc'h S (2018) Lateral root development: building a meristem de novo. Annual Plant Review 1:1
Chu TTH, Hoang TG, Trinh DC, Bureau C, Meynard D, Vernet A, Ingouf M, Do NV, Perin C, Guiderdoni E, Gantet P, Maurel C, Luu TD (2018) Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice. Rice 11:23
Cissoko M, Hocher V, Gherbi H, Gully D, Carré-Mlouka A, Sane S, Pignoky S, Champion A, Ngom M, Pujic P, Fournier P, Gtari M, Swanson E, Pesce C, Tisa LS, Sy MO, Svistoonoff1 S (2018) Actinorhizal signaling molecules: Frankia root hair deforming factor shares properties with NIN inducing factor. Frontiers in Plant Science 9:1494
Debieu M, Sine B, Passot S, Grondin A, Akata E, Gangashetty P, Vadez V, Gantet P, Fonceka D, Cournac L, Hash CT, Kane NA, Vigouroux Y, Laplaze L (2018) Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet. PLoS ONE 13:10
Djighaly PI, Diagne N, Ngom M, Ngom D, Hocher V, Fall D, Diouf D, Laplaze L, Svistoonoff S, Champion A (2018) Selection of arbuscular mycorrhizal fungal strains to improve Casuarina equisetifolia L. and Casuarinaglauca Sieb. tolerance to salinity. Annals of Forest Science 75:3
Grondin A, Dixit S, Torres R, Venkateshwarlu C, Rogers E, Mitchell-Olds T, Benfey, PN, Kumar A, Henry A (2018) Physiological mechanisms contributing to QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought. Rice 11:43
Hajjarpoor A, Soltani A, Zeinali E, Kashiri H, Aynehband A, Vadez V (2018) Using boundary line analysis to assess the on-farm crop yield gap of wheat. Field Crops Research 225:64
Hajjarpoor A, Vadez V, Soltani A, Gaur P, Whitbread A, Babu DS, Gumma MK, Diancoumba M, Kholova J (2018) Characterization of the main chickpea cropping systems in India using a yield gap analysis approach. Field Crops Research 223:93
Hoang TG, Gathignol F, Le TD, Nguyen TT, Gantet P, Pham XH, Lebrun M (2018) Screening of salt tolerance potential of a panel of Vietnamese rice landraces at seedling stage. Journal of Vietnam Agricultural Science and Technology 1:27
Laplaze L, Sparvoli F, Masmoudi K, Hash CT (2018) Editorial: Harvesting plant and microbial biodiversity for sustainably enhanced food security. Frontiers in Plant Science 9:42
Lavarenne J, Guyomarc'h S, Sallaud C, Gantet P, Lucas M (2018) The spring of systems biology-driven breeding. TRENDS in Plant Science 23:706
Mbodj D, Effa-Effa B, Kane A, Manneh B, Gantet P, Laplaze L, Diedhiou AG, Grondin A (2018) Arbuscular mycorrhizal symbiosis in rice: Establishment, environmental control and impact on plant growth and resistance to abiotic stresses. Rhizosphere 8:12
Passot S, Moreno-Ortega B, Moukouanga D, Balsera C, Guyomarc'h S,Lucas M, Lobet G, Laplaze L, Muller B, Guédon Y (2018) A new phenotyping pipeline reveals three types of lateral roots and a random branching pattern in two cereals. Plant Physiology 177:896
Reynolds M, Kropff M, Crossa J, Koo J, Kruseman G, Molero Milan A, Rutkoski J, Schulthess U, Singh B, Sonder K, Tonnang H, Vadez V (2018) Role of Modelling in international crop research: Overview and some case studies. Agronomy 8:291
Sivasakthi K, Thudi M, Tharanya M, Kale SM, Kholova J, Halime MH, Jaganathan D, Baddam R, Thirunalasundar T, Gaur PM, Varshney RK, Vadez V (2018) Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome. BMC Plant Biology 18:29
Ta KN, Khong NG, Ha TL, Nguyen DT, Mai DM, Hoang TG, Phung TPN, Bourrie I, Courtois B, Tran TTH, Dinh BY, La TN, Do NV, Lebrun M, Gantet P, Jouannic S (2018) A Genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits. BMC Plant Biology 18:282
Tharanya M, Kholova J, Sivasakthi K, Seghal D, Hash CT, Raj B, Srivastava RK, Baddam R, Thirunalasundari T, Yadav R, Vadez V (2018) Quantitative trait loci (QTLs) for water use and crop production traits co‑locate with major QTL for tolerance to water deficit in a fine mapping population of pearl millet (Pennisetum glaucum L.R.Br.). Theoretical and Applied Genetics 131:1509
Tharanya M, Sivasakthi K, Barzana G, Thirunalasundari T, Vadez V (2018) Pearl millet (Pennisetum glaucum) contrasting for the transpiration response to vapour pressure deficit also differ in their dependence on the symplastic and apoplastic water transport pathways. Functional Plant Biology 45:719
von Wettberg EJB, Chang PL, Basdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Sani SGAS, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur PM, Yildirim Mm Sharma HC, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, Cook DR (2018) Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications 9:649
2017
CacasJL, PréM, PizotM, CissokoM, DiedhiouI, JalloulA, DoumasP, Nicole N, Champion A (2017) GhERF-IIb3 regulates accumulation of jasmonate and leads to enhanced cotton resistance to blight disease. Molecular Plant Pathology 18:825
Debieu M, Kanfany G, Laplaze L (2017) Pearl millet genome: Lessons from a tough crop. Trends in Plant Science 22:911
Makhzoum A, Malik S, Yousefzadi M, Gantet P, Tremouillaux-Guiller (2017) Strigolactones biology: genes, functional genomics, epigenetics and applications. Critical Reviews in Biotechnology 37:151
Medina S, Gupta SK, Vadez V (2017) Transpiration Response and Growth in pearl millet parental lines and hybrids bred for contrasting rainfall environments. Frontiers in Plant Science 8:1846
Ndour A, Vadez V, Pradal C, Lucas M (2017) Virtual plants need water too: Functional-structural root system models in the context of drought tolerance breeding. Frontiers in Plant Sciences 8:1577
Oshone R, Ngom M, Chu F, Mansour S, Sy MO, Champion A, Tisa LS (2017) Genomic, transcriptomic, and proteomic approach towards understanding the molecular mechanisms of salt tolerance in Frankia strains isolated from Casuarina trees. BMC Genomics 18:633
Rodrigues O, Reshetnyak G, Grondin A, Saijo Y, Leonhardt N, Maurel C, Verdoucq L (2017) Aquaporins facilitate hydrogen peroxide entry into guard cells to mediate ABA- and pathogen-triggered stomatal closure. Proceedings of the National Academy of Sciences 114:9200
Sinclair TR, Devi J, Shekoofa A, Choudhary S, Sadok W, Vadez V, Riar M, Rufty T (2017) Limited-transpiration response to high vapor pressure deficit in crop species. Plant Science 260:109
Sivasakthi K, Tharanya M, Kholová J, Wangari Muriuki R, Thirunalasundari T, Vadez V (2017) Chickpea genotypes contrasting for vigor and canopy conductance also differ in their dependence on different water transport pathways. Frontiers in Plant Science 8:1663
Sivasakthi K, Zaman-Allah M, Tharanya M, Kholová J, Thirunalasundari T, Vadez V (2017) Chickpea. In: Sinclair T. (eds) Water-conservation traits to increase crop yields in water-deficit environments. Pp 73-83. SpringerBriefs in Environmental Science Springer, Cham.
Ta KN, Adam H, Staedler MY, Schoenenberger J, Harrop T, Tregear WJ, Do NV, Gantet P, Ghesquière A, Jouannic S (2017) Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated african rice. EvoDevo 8:2
Tharanya M, Kholová J, Sivasakthi K, Thirunalasundari T, Vadez V (2017) Pearl Millet. In: Sinclair T. (eds) Water-conservation traits to increase crop yields in water-deficit environments. Pp 35-45. SpringerBriefs in Environmental Science Springer, Cham.
Vadez V, Halilou O, Hissene HM, Sibiry-Traore P, Sinclair TR, Soltani A (2017) Mapping water stress incidence and intensity, optimal plant populations, and cultivar duration for african groundnut productivity enhancement. Frontiers in Plant Science 8:432
2016
Chabaud M, Gherbi H, Pirolles E, Vaissayre V, FournierJ, Moukouanga D, Franche C, Bogusz D, Tisa L, Barker D, Svistoonoff S (2016) Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca2+ spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. New Phytologist 209:86
Diedhiou AG, Mbaye FK, Mbodj D, Faye MN, Pignoly S, Ndoye I, Djaman K, Gaye S, Kane A, Laplaze L, Manneh B, Champion A (2016) Field trials reveal ecotype-specific responses to mycorrhizal inoculation in rice. PLoS ONE 11:e0167014
Goh T, Toyokura K, Wells DM, Swarup K, Yamamoto M, Mimura T, Weijers D, Fukaki H, Laplaze L, Bennett MJ, Guyomarc'h S (2016) Quiescent center initiation in the Arabidopsis lateral root primordia is dependent on the SCARECROW transcription factor. Development 143:3363
Hanin M, Ebel C, Ngom M, Laplaze L, Masmoudi M (2016) New insights on plant salt tolerance mechanisms and their potential use for breeding. Frontiers in Plant Science 7:1787
Lavenus J, Guyomarc’h S, Laplaze L (2016) PIN transcriptional regulation shapes root system architecture. Trends in Plant Sciences 21:175
Ngom M, Gray K, Diagne N, Oshone R, Fardoux J, Gherbi H, Hocher V, Svistoonoff S, Laplaze L, Tisa LS, Sy MO, Champion A (2016) Symbiotic performance of diverse Frankia strains on salt-stressed Casuarina glauca and Casuarina equisetifolia plants. Frontiers in Plant Science 7:1331
Ngom M, Oshone R, Diagne N, Cissoko M, Svistoonoff S, Tisa L, Laplaze L, Sy MO, Champion A (2016) Tolerance to environmental stress by the nitrogen-fixing actinobacterium Frankia and its role in actinorhizal plants adaptation. Symbiosis 70:17
Ngom M, Oshone R, Hurst S, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas W, Tisa LS (2016) Permanent draft genome sequence for Frankia sp. strain CeD, a nitrogen-fixing Actinobacterium isolated from the root nodules of Casuarina equistifolia grown in Senegal. Genome Announcement 4:e00265-16
Oshone R, Ngom M, Abebe-Akele F, Simpson S, Morris K, Sy MO, Champion A, Thomas W, Tisa LS (2016) Permanent draft genome sequences for Frankia sp. strain Allo2, a salt-tolerant nitrogen-fixing Actinobacterium isolated from the root nodules of Allocasuarina. Genome Announcement 4:e00388-16
Passot S, Gnacko F, Moukouanga D,Lucas M,Guyomarc'h S, Moreno Ortega B, Atkinson J, Niang M, Bennett M, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science 7:829
Phung NTP, Mai CD, Hoang GT, Truong HTM, Lavarenne J, Gonin M, Nguyen KL, Ha TT, Do VN, Gantet P, Courtois B (2016) Genome-wide association mapping for root traits in a panel of rice accessions from Vietnam. BMC Plant Biology 16:64
Poonlaphdecha J, Gantet P, Maraval I, Sauvage FX, Menut C, Morere A, Boulanger R, Wust M, Gunata Z (2016) Biosynthesis of 2-acetyl-1-pyrroline in rice calli cultures: Demonstration of 1-pyrroline as a limiting substrate. Food Chemistry 197:965
Selvakesavan RK, Dhanya NN, Thushara P, Abraham SM, Jayaraj RSC, Balasubramanian A, Deeparaj B, Sudha S, Sowmiya Rani KS, Bachpai VKW, Ganesh D, Diagne N, Laplaze L, Gherbi H, Svistoonoff S, Hocher V, Franche C, Bogusz D, Nambiar-Veetil M (2016) Intraspecies variation in sodium partitioning, potassium and proline accumulation under salt stress in Casuarina equisetifolia Forst. Symbiosis 70:117
Ta KN, Sabot F, Adam H, Vigouroux Y, De Mita S, Ghesquière A, Do, NV, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species. Rice 9:10
2015
Bellafiore S, Jougla C, Chapuis E, Besnard G, Suong M, Nguyen VP, De Waele D, Gantet P, Ngo TX (2015) Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam. Comptes Rendus Biologies 338:471
Champion A, Lucas M, Tromas A, Vaissayre V, Crabos A, Diedhiou I, Prodjinoto H, Moukouanga D, Pirolles E, Cissoko M, Bonneau J, Gherbi H, Franche C, Hocher V, Svistoonoff S, Laplaze L (2015) Inhibition of auxin signaling in Frankia-infected cells in Casuarina glaucanodules leads to increased nodulation. Plant Physiology 167:1149
Clavijo F, Diedhiou I, Vaissayre V, Brottier L, Acolatse J, Moukouanga D, Crabos A, Auguy F, Franche C, Gherbi H,Champion A, Hocher V, Barker D, Bogusz D, Tisa LS, Svistoonoff S (2015) The Casuarina NIN gene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals. New Phytologist 208:887
Coudert Y, Le Thi VA, Adam H, Bes M, Vignols F, Jouannic S, Guiderdoni E, Gantet P (2015) Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of post-embryonic root formation. New Phytologist 206:243
Fahr M, Laplaze L, El Mzibri M, Doumas P, Bendaou N, Hocher V, Bogusz D, Smouni A (2015) Lead tolerance and accumulation in metallicolous and non-metallicolous populations of Hirschfeldia incana. Experimental & Environmental Botany 109:186
Hoang TG, Mai DC, Nguyen TH, Lavarenne J, Gonin M, Nguyen TH, Do NV, Gantet P (2015) Optimization of transformationprotocol for Japonica rice cv. Taichung 65 through Agrobacterium tumefaciens. J. Sci. Dev. 13:764 (in Vietnamese)
Jalloul A, Sayegh M, Champion A, Nicole M (2015) Bacterial blight of cotton. Phytopathologia Mediterranea 54:3-20
Khong NG, Pati PK, Richaud F, Parizot B, Bidzinski P, Mai DC, Bes M, Bourrie I, Meynard D, Beeckman T, Gomez Selvaraj M, Manabu I, Genga AM, Brugidou C, Do NV, Guiderdoni E, Morel JB, Gantet P (2015) OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice. Plant Physiology 169:2935
Laplaze L, Lucas M, Champion A (2015) Rhizobial root hair infection requires auxin signaling. Trends in Plant Sciences 20:332
Larrieu A, Champion A, Legrand J, Lavenus J, Mast D, Brunoud G, Oh J, Guyomarc'h S, Pizot M, Farmer EE, Turnbull C, Vernoux T, Bennett MJ, Laplaze L (2015) A fluorescent hormone biosensor reveals the dynamics of jasmonate signalling in plants. Nature Communication 6:6043
Lavenus J, Goh T, Guyomarc'h S, Hill K, Lucas M, Voss U, Kenobi K, Wilson M, Farcot E, Hagen G, Guilfoyle TJ, Fukaki H, Laplaze L, Bennett MJ (2015) Inference of the Arabidopsis lateral root gene regulatory network reveals a bifurcation mechanism that defines primordia flanking and central zones. The Plant Cell 27:1368
Ngom M, Diagne N, Laplaze L, Champion A, Sy MO (2015) Symbiotic ability of diverse Frankiastrains on Casuarina glaucaplants in hydroponic conditions. Symbiosis 70:79
Nguyen TD, Lacombe S, Bangratz M, Ta HA, Do NV, Gantet P, Brugidou C (2015) p2 of rice grassy stunt virus (RGSV) and p6 and p9 of rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway. Virus Genes 51:267
Voß U, Wilson M, Kenobi K, Gould P, Robertson F, Peer WA, Lucas M, Swarup K, Casimiro I, Holman T, Wells D, Peret B, Goh T, Fukaki H, Hodgman C, Laplaze L, Halliday K, Ljung K, Murphy A, Hall A, Webb A, Bennett MJ (2015) Lateral root organ initiation re-phases the circadian clock in Arabidopsis thaliana. Nature Communications 6:7641