DIversité - Adaptation - DEveloppement des plantes


Adam H, Gutiérrez A, Couderc M, Sabot F, Ntakirutimana F, Serret J, Orjuela J, Tregear J, Jouannic S, Lorieux M (2023). Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture. BMC Genomics. 2023; 24: 587. doi: 10.1186/s12864-023-09695-6

Beretta VM, Franchini E, Ud Din I, Lacchini E, Van den Broeck L, Sozzani R, Orozco-Arroyo G, Caporali E, Adam H, Jouannic S, Gregis V, Kater MM. (2023) The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice. Plant J. https://doi.org/10.1111/tpj.16229.


Tregear JW, Richaud F, Collin M, Esbelin J, Parrinello H, Cochard B, Nodichao L, Morcillo F, Adam H, Jouannic S (2022). Micro-RNA-Regulated SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Expression and Cytokinin Accumulation Distinguish Early-Developing Male and Female Inflorescences in Oil Palm (Elaeis guineensis). Plants 11, 685. doi: 10.3390/plants11050685.



Hosni H, Diallo A, Morcillo F, Vaissayre V, Collin M, Tranchant-Dubreuil C, Dussert S, Joët T, Castaño F, Marquínez X, Stauffer FW, Hodel DR, Castillo Mont JJ, Adam H, Jouannic S, Tregear JW (2021). Redox-related gene expression and sugar accumulation patterns are altered in the edible inflorescence produced by the cultivated form of pacaya palm (Chamaedorea tepejilote). Annals of Botany, doi: 10.1093/aob/mcab060.

Khong NG, Le TN, Pham TM, Adam H, Gauron C, Le QH, Pham TD, Colonges K, Pham HX, Do NV, Lebrun M, Jouannic S. (2021). A cluster of Ankyrin and Ankyrin-TPR repeat genes is associated with panicle branching diversity in rice. PLoS Genetics, doi: 10.1371/journal.pgen.1009594.

Luong AM, Adam H, Gauron C, Affortit P, Ntakirutimana F,  Khong NG, Le QH, Le TN, Fournel M, Lebrun M, Tregear JJouannic S. (2021). Functional diversification of euANT/PLT genes in Oryza sativa panicle architecture determination. Frontiers in Plant Science, doi: 10.3389/fpls.2021.692955.



Cubry P, Pidon H, Ta KN, Tranchant-Dubreuil C, Thuillet A-C, Holzinger M, Adam H, Kam H, Chrestin H, Ghesquière A, François O, Sabot F, Vigouroux Y, Albar L, Jouannic S (2020) Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima. Rice 13: 122.


Lacchini E, Kiegle E, Castellani M, Adam H, Jouannic S, Gregis V, Kater MM (2020) CRISPR-mediated accelerated domestication of African rice landraces. PLoS ONE 15: e0229782–12. 

Lavarenne J, Gonin M, Champion A, Javelle M, Adam H, Rouster J, Conejéro G, Lartaud M, Verdeil JL, Laplaze L, Sallaud C, Lucas M, Gantet P. Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice. PLoS One. 2020 Nov 19;15(11):e0238736. doi: 10.1371/journal.pone.0238736.


Hoang TG, Dinh VL, Nguyen TT, Ta KN, Gathignol F, Mai DC, Jouannic S, Tran DK, Khuat HT, Do NV, Lebrun M, Courtois B, Gantet P (2019). Genome-wide association study of a panel of Vietnamese rice landraces reveals new QTLs for tolerance to water deficit during the vegetative phase. Rice 12: 4.


Harrop TWR, Mantegazza O, Luong AM, Béthune K, Lorieux M, Jouannic S, Adam H (2019).  A set of AP2-like genes is associated with inflorescence branching and architecture in domesticated rice. Journal of Experimental Botany doi: 10.1093/jxb/erz340.



Ta KN, Khong NG, Ha TL, Nguyen DT, Mai DC, Hoang TG, Phung TPN, Bourrie I, Courtois B, Tran TTH, Dinh BY, LA TN, DO NV, Lebrun M, Gantet P, Jouannic S (2018). A genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits. BMC Plant Biology 14:282.



Ta KN, Adam H, Staedler YM, Schönenberger J, Harrop T, Tregear J, Do NV, Gantet P, Ghesquiere A, Jouannic S (2017). Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice. EvoDevo 8: 2.



Adriani DE, Dingkuhn M, Dardou A, Adam H, Luquet D, Lafarge T (2016). Rice panicle plasticity in Near Isogenic Lines carrying a QTL for larger panicle is genotype and environment dependent. Rice 9:28.


Castaño F, Marquínez X, Crèvecoeur M, Collin M, Stauffer FW, Tregear JW (2016). Comparison of floral structure and ontogeny in monoecious and dioecious species of the palm tribe Chamaedoreeae (Arecaceae; Arecoideae). International Journal of Plant Science 177: 247–262.


Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S (2016). Evolutionary forces affecting synonymous variations in plant genomes. PLoS Genetics 13:e1006799.


Guerin C, Joët T, Serret J, Lashermes P, Vaissayre V, Agbessi MD, Beulé T, Severac D, Amblard P, Tregear JW, Durand-Gasselin T, Morcillo F, Dussert S (2016) Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm. The Plant Journal 87: 423-441.


Harrop TWR, Ud Din I, Gregis V, Osnato M, Jouannic S, Adam H, Kater MM (2016) Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection. The Plant Journal 86: 75–88.


Maugarny-Calès A, Gonçalves B, Jouannic S, Melkonian M, Wong GK, Laufs P (2016) Apparition of the NAC transcription factors predates the emergence of land plants. Molecular Plant 9: 1345-1348.


Nadot S, Alapetite E, Baker WJ, Tregear JW, Barfod AS (2016). The palm (Arecaceae) family: a microcosm of sexual system evolution. Botanical Journal of the Linnean Society, 182 : 376-388.


Ta KN, Sabot F, Adam H, Vigouroux Y, De Mita S, Ghesquiere A, Do NV, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species. Rice 9:10.



Coudert Y, Le VA, Adam H, Bès M, Vignols F, Jouannic S, Guiderdoni E, Gantet P (2015). Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytologist 206: 243-254.



Castaño F, Stauffer FW, Marquinez X, Crèvecoeur M, Collin M, Pintaud JC, Tregear JW (2014). Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae). Annals of Botany, 114: 1483-1495.


Nabholz B, Sarah G, Sabot F, Ruiz M, Adam H, Nidelet S, Ghesquière A, Santoni S, David J, Glémin S (2014). Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology 23: 2210-2227.


Orjuela J, Sabot F, Chéron S, Vigouroux Y, Adam H, Chrestin H, Sanni K, Lorieux M, Ghesquière A (2014). An extensive analysis of the African rice genetic diversity through a global genotyping. Theoretical and Applied Genetics 127: 2211-2223.


Phung NT, Mai CD, Mournet P, Frouin J, Droc G, Ta NK, Jouannic S, Lê LT, Do VN, Gantet P, Courtois B. (2014). Characterization of a panel of Vietnamese rice varieties using DArT and SNP markers for association mapping purposes. BMC Plant Biology 19: 371.



A L-Tam F, Adam H, Anjos Ad, Lorieux M, Larmande P, Ghesquière A, Jouannic S, Shahbazkia HR (2013). P-TRAP: a Panicle TRAit Phenotyping tool. BMC Plant Biology 13: 122.


Rival A, Ilbert P, Labeyrie A, Torres E, Doulbeau S, Personne A, Dussert S, Beule T, Durand-Gasselin T, Tregear JW, Jaligot E (2013). Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Plant Cell Reports 32: 359-368.